Index

A

AEDES_EXP_PARAMS (in module MGSurvE.constants)

B

BASIC_EXP_TRAP (in module MGSurvE.constants)

C

calcAttractiveness() (in module MGSurvE.matrices) calcDiscreteFitness() (in module MGSurvE.optimization) calcDiscreteFitnessPseudoInverse() (in module MGSurvE.optimization) calcDiscreteSexFitness() (in module MGSurvE.optimization) calcDistanceMatrix() (in module MGSurvE) (in module MGSurvE.matrices) calcFitness() (in module MGSurvE.optimization) calcFitnessPseudoInverse() (in module MGSurvE.optimization) calcFundamentalMatrix() (MGSurvE.landscape.Landscape method) calcMaskedMigrationMatrix() (in module MGSurvE.matrices) calcPointsDistances() (MGSurvE.landscape.Landscape method) calcPointsMaskedMigration() (MGSurvE.landscape.Landscape method)

calcPointsMigration() (MGSurvE.landscape.Landscape method) calcSexFitness() (in module MGSurvE.optimization) calcTrapsDistances() (MGSurvE.landscape.Landscape method) calcTrapsMigration() (MGSurvE.landscape.Landscape method) calcTrapsProbabilities() (in module MGSurvE.matrices) calcTrapsToPointsDistances() (in module MGSurvE.matrices) calculateNetworkCentralities() (in module MGSurvE.network) cheapRuler() (in module MGSurvE.auxiliary) chromosomeIDtoXY() (in module MGSurvE.optimization) colorPaletteFromHexList() (in module MGSurvE.colors) cxBlend() (in module MGSurvE.optimization) cxDiscreteUniform() (in module MGSurvE.optimization)

D

dumpLandscape() (in module MGSurvE.auxiliary)

E

evaluate() (MGSurvE.optimizationPSO.Particle_Swarm method) exponentialAttractiveness() (in module MGSurvE.kernels) exponentialDecay() (in module MGSurvE.kernels)

exponentialKernel() (in module MGSurvE.kernels) exportForMGDrivE() (MGSurvE.landscape.Landscape method) exportLandscape() (in module MGSurvE.auxiliary) exportLog() (in module MGSurvE.optimization)

G

generate() (MGSurvE.optimizationPSO.Particle_Swarm method) genFixedTrapsMask() (in module MGSurvE.optimization) genVoidFullMigrationMatrix() (in module MGSurvE.matrices) getBoundingBox() (MGSurvE.landscape.Landscape method) getCanonicalElements() (in module MGSurvE.optimization) getDaysTillTrapped() (in module MGSurvE.optimization) (MGSurvE.landscape.Landscape method) getDaysTillTrappedPseudoInverse() (in module MGSurvE.optimization)

getDaysTillTrappedVector() (in module MGSurvE.optimization) getFundamentalFitness() (in module MGSurvE.optimization) getFundamentalMatrix() (in module MGSurvE.optimization) getFundamentalMatrixPseudoInverse() (in module MGSurvE.optimization) getFundamentalVector() (in module MGSurvE.optimization) getImmovableLocMask() (MGSurvE.optimizationPSO.Particle_Swarm method) getMarkovAbsorbing() (in module MGSurvE.optimization) getMeanTimeToCapture() (in module MGSurvE.optimization) getTimeToCapture() (in module MGSurvE.optimization)

H

haversineDistance() (in module MGSurvE.auxiliary)

I

importLog() (in module MGSurvE.optimization) initChromosome() (in module MGSurvE.optimization) initChromosomeMixed() (in module MGSurvE.optimization)

initDiscreteChromosome() (in module MGSurvE.optimization) inverseLinearStep() (in module MGSurvE.kernels) isNotebook() (in module MGSurvE.auxiliary)

L

LAND_TUPLES (in module MGSurvE.constants)

Landscape (class in MGSurvE.landscape) loadLandscape() (in module MGSurvE.auxiliary)

M

makeFolder() (in module MGSurvE.auxiliary) makeFolders() (in module MGSurvE.auxiliary) MCOL (in module MGSurvE.constants) MEDIUM_MOV_EXP_PARAMS (in module MGSurvE.constants) MGSurvE module MGSurvE.auxiliary module, [1] MGSurvE.colors module, [1] MGSurvE.constants module, [1] MGSurvE.kernels module, [1] MGSurvE.landscape module, [1] MGSurvE.matrices module, [1] MGSurvE.network module MGSurvE.optimization module, [1] MGSurvE.optimizationPSO module, [1]

MGSurvE.plots module, [1] MGSurvE.pointProcess module, [1] MKRS (in module MGSurvE.constants) module MGSurvE MGSurvE.auxiliary, [1] MGSurvE.colors, [1] MGSurvE.constants, [1] MGSurvE.kernels, [1] MGSurvE.landscape, [1] MGSurvE.matrices, [1] MGSurvE.network MGSurvE.optimization, [1] MGSurvE.optimizationPSO, [1] MGSurvE.plots, [1] MGSurvE.pointProcess, [1] mutateChromosome() (in module MGSurvE.optimization) mutateChromosomeAsymmetric() (in module MGSurvE.optimization) mutateChromosomeMixed() (in module MGSurvE.optimization) mutateDiscreteChromosome() (in module MGSurvE.optimization) mutShuffleIndexes() (in module MGSurvE.optimization)

N

nSolveKernel() (in module MGSurvE.kernels)

O

optimizeDiscreteTrapsGA() (in module MGSurvE.optimization)

optimizeTrapsGA() (in module MGSurvE.optimization) optimizeTwoSexesTrapsGA() (in module MGSurvE.optimization)

P

Particle_Swarm (class in MGSurvE.optimizationPSO) PINK_NAVY (in module MGSurvE.constants) plotClean() (in module MGSurvE.plots) plotDirectedNetwork() (in module MGSurvE.plots) (MGSurvE.landscape.Landscape method) plotFitness() (in module MGSurvE.plots) plotGAEvolution() (in module MGSurvE.plots) plotLandBoundary() (in module MGSurvE.plots) (MGSurvE.landscape.Landscape method) plotMaskedMigrationNetwork() (MGSurvE.landscape.Landscape method) plotMatrix() (in module MGSurvE.plots) plotMigrationNetwork() (in module MGSurvE.plots) (MGSurvE.landscape.Landscape method)

plotMovementKernel() (in module MGSurvE.plots) plotsClearMemory() (in module MGSurvE.plots) plotSites() (in module MGSurvE.plots) (MGSurvE.landscape.Landscape method) plotTraps() (in module MGSurvE.plots) (MGSurvE.landscape.Landscape method) plotTrapsKernels() (in module MGSurvE.plots) plotTrapsNetwork() (in module MGSurvE.plots) (MGSurvE.landscape.Landscape method) ptsDonut() (in module MGSurvE.pointProcess) ptsPossion() (in module MGSurvE.pointProcess) ptsRandUniform() (in module MGSurvE.pointProcess) ptsRegularCircle() (in module MGSurvE.pointProcess) ptsRegularGrid() (in module MGSurvE.pointProcess)

R

reshapeInCanonicalForm() (in module MGSurvE.optimization)

S

saveFig() (in module MGSurvE.plots) setup_stats() (in module MGSurvE.optimizationPSO)

setup_toolbox() (MGSurvE.optimizationPSO.Particle_Swarm method) SHORT_EXP_PARAMS (in module MGSurvE.constants) sigmoidDecay() (in module MGSurvE.kernels)

T

TRP_COLS (in module MGSurvE.constants)

truncatedExponential() (in module MGSurvE.kernels)

U

updateParticle() (MGSurvE.optimizationPSO.Particle_Swarm method) updateTraps() (MGSurvE.landscape.Landscape method)

updateTrapsCoords() (MGSurvE.landscape.Landscape method) updateTrapsCoordsByID() (MGSurvE.landscape.Landscape method) updateTrapsRadii() (MGSurvE.landscape.Landscape method)

V

vincentyDistance() (in module MGSurvE.auxiliary)

Z

zeroInflatedExponentialKernel() (in module MGSurvE.kernels)

zeroInflatedLinearMigrationKernel() (in module MGSurvE.kernels)