MGSurvE.optimization
====================

.. automodule:: MGSurvE.optimization

   
   
   

   
   
   .. rubric:: Functions

   .. autosummary::
   
      calcDiscreteFitness
      calcDiscreteFitnessPseudoInverse
      calcDiscreteSexFitness
      calcFitness
      calcFitnessPseudoInverse
      calcSexFitness
      chromosomeIDtoXY
      cxBlend
      cxDiscreteUniform
      exportLog
      genFixedTrapsMask
      getCanonicalElements
      getDaysTillTrapped
      getDaysTillTrappedPseudoInverse
      getDaysTillTrappedVector
      getFundamentalFitness
      getFundamentalMatrix
      getFundamentalMatrixPseudoInverse
      getFundamentalVector
      getMarkovAbsorbing
      getMeanTimeToCapture
      getTimeToCapture
      importLog
      initChromosome
      initChromosomeMixed
      initDiscreteChromosome
      mutShuffleIndexes
      mutateChromosome
      mutateChromosomeAsymmetric
      mutateChromosomeMixed
      mutateDiscreteChromosome
      optimizeDiscreteTrapsGA
      optimizeTrapsGA
      optimizeTwoSexesTrapsGA
      reshapeInCanonicalForm